パッケージ org.utgenome.shell

インタフェースの概要
Create.ScaffoldFileFilter  
ServerListener  
 

クラスの概要
AddAction A UTGBShell sub-command for adding new action class
Clean UTGB Shell Sub Command for cleaning target directory
Compile A UTGBShell sub command for compiling java source codes with Maven
Create Create sub command
Create.CreateAllScaffoldFileFilter  
Deploy  
Eclipse A sub command to generate Eclipse project files
FastqRename  
FastqToFasta fastq2fasta command
FastqToSAM  
GWT A sub command for creating a GWT interface
GWTCompile  
Illumina2Fastq  
Import import command
Keyword keyword DB management tool
Maven Maven utility
Maven.CommandExecutor  
Pack creating packed FASTA
POM POM objects corresponds to a Maven project file (pom.xml)
POMProperties This class is used for retrieving the revision value described in the pom.xml file
QSeqToFastq  
Repair  
Sam2Wig  
SAMToFastq  
ScaffoldGenerator Scaffold generator
Sequence Retrieve the genome sequence from the pack file
Server A UTGB sub command for starting up a UTGB portable server
SVNAdd Sub-command to add the current project to the subversion repository
Upgrade  
UTGBPortable The stand-alone UTGB server launcher
UTGBPortableConfig The configuration parameters of the UTGBPortable
UTGBPortableWidget GUI Panel of the UTGB Portable Server
UTGBShellCommand A base implementation of the UTGBShell's sub commands
WebBrowser Open a given URL via OS's default web browser.
 

列挙型の概要
Create.OverwriteMode  
Import.FileType  
Keyword.SubCommand  
OSType This class provides information of current OS type.
UTGBPortableWidget.MessageType  
 



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